ncbi non redundant protein sequences database nr (Biotechnology Information)
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Ncbi Non Redundant Protein Sequences Database Nr, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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1) Product Images from "An enzyme-level benchmark based on environmental bacterial laccases for predicting contaminant fate in water"
Article Title: An enzyme-level benchmark based on environmental bacterial laccases for predicting contaminant fate in water
Journal: bioRxiv
doi: 10.64898/2026.01.27.701970
Figure Legend Snippet: (A) Approximate maximum-likelihood phylogenetic tree of the multicopper oxidase MCO1 from Nitrosomonas sp. and two new laccases experimentally validated in this study from a methane-oxidizing bacterium (mMCO, NCBI ID: HEY7867587.1) and a soil ammonia-oxidizing archaeon (aMCO, HYV56308.1) displayed relative to other uncharacterized homologs in global metagenomic datasets colored by metagenomically-assigned phylum of origin. (B) Biogeographic distribution of MCO1 homologs from samples where location information was recorded in environmental sample metadata. Two samples were from notably contaminated sites: Red triangle = soil site contaminated with 1000 mg Cr (VI) kg - . Red circle = crude-oil contaminated marine sediment site.
Techniques Used: Environmental Sampling
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Sequencing:Article Title: Full-genome sequence of a novel potyvirus infecting Sauropus androgynus. Article Snippet: In the present study, the full-genome sequence of a novel potyvirus, provisionally named “Sauropus androgynus potyvirus 1” (SAPV1), was determined using a combination of high-throughput sequencing (HTS) contig assembly, reverse transcription polymerase chain reaction (RT-PCR), and rapid amplification of cDNA ends (RACE) PCR.. The full-genome sequencing of SAPV1, excluding the 3’ poly(A) tail, was 10,365 nucleotides long and encoded a large polyprotein comprising 3,315 amino acids.. Maximum likelihood phylogenetic analysis based on the multiple sequence alignment of the polyprotein sequence revealed that SAPV1 clustered with the genus Potyvirus as a monophyletic clade, with its closest evolutionary relative being the Plum pox virus (PPV). |